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IntroductionMRIcro is a small program that runs on Apple OSX for viewing the NIfTI format of medical images popular with scientists (medical DICOM images can be converted to NIfTI using tools like my free. This software can be used to inspect images from many different modalities including Magnetic Resonance Imaging (MRI), Computerized Axial Tomography (CAT, CT), Positron Emission Tomography (PET), Scanning Electron Microscopes (SEM) and 3D ultrasounds. This can help scientists visualize data or students learn anatomy. Requirements, Downloading and InstallationThis software is available for Macintosh OSX 10.7 and later with 64-bit Intel CPUs.
Users of other operating systems should consider. Users with older versions of OSX should consider.
The software uses the computers graphics card, so computers with better cards and drivers will be able to view higher resolution images as described in the troubleshooting section. • This adds an “Import” menu to convert DICOM images to the NIfTI format using dcm2nii. If your computer does not allow you to open this program you will have to explicitly allow it to run using your ‘Security & Privacy’ system preferences control panel. • • Supported FormatsThis software can display the following formats: (.nii,.nii.gz,.hdr/.img), Bio-Rad Pic (.pic),, Philips (.par/.rec), (.mhd,.mha), AFNI (.head/.brik), (.mgh,.mgz), DICOM (extensions vary) Getting StartedTo load an image, you can drag the image to the application icon, drag the image to an open window, or use the File/Open command. The software also provides a File/OpenRecent menu item for reloading images. You can view multiple images simultaneously. Here are some simple commands for adjusting the view: • Toolbar adjustments (you can hide or show the toolbar with the View menu) • The “Color Scheme” pulldown menu allows you to adjust the colors used to display image intensity.
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Initially, this is set to black-white, but you have many options such as blue-green. • The “Darkest” and “Brightest” number values allow you to display the range for image intensity. Download frostwire for mac 10.5 8. For example, in Figure 2 the color range for the blue-green overlay is from 2 to 5. • The “I”nformation button displays basic information about your image (e.g.
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Image resolution). • The “View” pull down menu allows you to set whether you want to see only 2D slices, only 3D renderings or both (the default). After effects full version free. • Mouse/Touchpad adjustments • Click on any location on a 2D slice to jump to that location. • Drag the 3D rendering to rotate the object. • Roll the scroll wheel up and down (or pull two fingers up and down on a touch pad) to adjust the clipping depth of the 3D rendering (for example, in Figure 2 we have clipped the top of the brain from the rendering).
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• Right-click and drag over the 3D rendering to adjust the position of the clipping plane (for example, in Figure 2 we have set the clip plane to remove the top of the head). • If you have an overlay loaded (described below), right-click and drag over the 2D slices to adjust the transparency of the overlay. • If you have a 4D dataset loaded (described below), roll the scroll wheel left and right (or swipe left and right with two fingers) to adjust which volume is displayed. • Menu adjustments • The View/RemoveHaze command removes ‘dust’ from the air around an object (described below). • The View/ChangeBackground switches the background between black and white. • The Window/YokeWindows option allows you to link different images so they display the same location. Loading OverlaysMRIcro viewer can load additional images on top of your initial (background) image.
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This is useful for interpreting the anatomical coordinates of statistical maps. For example, Figure 2 shows a scalp-stripped high resolution MRI scan in grayscale with a statistical map on top. To achieve this, first open your background image, then choose File/Add to select your overlay maps. Sony sound forge mac download. Note that overlay maps must be aligned (in register with) your background image – however they do not have to have the same dimensions (the overlay images will be automatically resliced to the resolution of the background image). You can independently adjust the color scheme and contrast of the background and overlays by selecting the layer from the rightmost drop down menu (e.g.
Download latest vlc for mac. In Figure 2, “Overlay 1” is selected) and then setting the color scheme (e.g. Blue-green) and color range (in this case 2.5).